[PDF]     https://doi.org/10.3952/physics.2026.66.2.4

Open access article / Atviros prieigos straipsnis
Lith. J. Phys. 66, 91–106 (2025)
 


INFLUENCE OF Fe2+ ON LIPID ORIENTATION IN THE CELL MEMBRANE BILAYER: QUANTUM CHEMICAL MODELLING
  Teresė Kondrotaitė-Intėa,b, Alytis Gruodisc, and Gintautas Saulisb
aDepartment of Mechanical and Materials Engineering, Vilnius Gediminas Technical University, Plytinės 25, 10105 Vilnius, Lithuania
bDepartment of Biology, Faculty of Natural Sciences, Vytautas Magnus University, Universiteto 10-314, Akademija, 53361 Kaunas, Lithuania
cInstitute of Chemical Physics, Vilnius University, Saulėtekio 3, 10257 Vilnius, Lithuania
Email: alytis.gruodis@ff.vu.lt; gintautas.saulis@vdu.lt; terese.kondrotaite@gmail.com

Received 29 December 2025; accepted 21 January 2026

To understand the dynamics of hole formation and the progression of hole closure in the membrane layer at the molecular level, the structures of phospholipids and iron-ion associates were modelled using quantum-mechanical methods. It has been found that metal ion fixation to the lipid chain is insignificant in forming lipid conformational movement. Similarly, metal ion fixation in the case of the –N(CH3)3 head in the lipid head group is not formed. The iron ion binds two lipid molecules in the orthophosphoric region, forming an energetically stable bridge between orthophosphoric fragments. As a result of this process, the lipid aliphatic chains change their conformation: a curved chain forms around the metal ion centre from a straight structure. A typical molecular charge redistribution during excitation was determined and described. It is stated that, due to the energetically favourable position of the Fe2+ ion, one lipid serves as a charge donor and the other as a charge acceptor.
Keywords: Fe2+ ion, phospholipids, lipid–Fe–lipid associate, complex stability


Fe2+ ĮTAKA LIPIDŲ ORIENTACIJAI LĄSTELĖS MEMBRANOS DVISLUOKSNYJE: MODELIAVIMAI KVANTINĖS CHEMIJOS METODAIS
Teresė Kondrotaitė-Intėa,b, Alytis Gruodisc, Gintautas Saulisb
aFizinių ir technologijos mokslų centro Optoelektronikos skyrius, Vilnius, Lietuva
bVilniaus universiteto Fizikos fakulteto Taikomosios elektrodinamikos ir telekomunikacijų institutas, Vilnius, Lietuva
cVilniaus universiteto Fizikos fakulteto Fotonikos ir nanotechnologijų institutas, Vilnius, Lietuva
 
Siekiant suprasti ląstelės membranos skyles formuojančių procesų dinamiką ir skylės užsidarymo progresavimą sluoksnyje žemiausiu molekuliniu lygmeniu, buvo atliktas fosfolipidų ir geležies jonų asociatų struktūros modeliavimas kvantinės molekulinės teorijos metodais. Nustatyta, kad metalo jonų fiksavimasis prie lipidų grandinės nevyksta. Panašiai, metalo jono prisijungimas prie lipidų galvos grupės –N(CH3)3 yra neįmanomas. Geležies jonas jungia dviejų lipidų molekulės ortofosforo fragmentus, taip sudarydamas energetiškai stabilų tiltą. Šio proceso rezultatas – lipidų alifatinės grandinės keičia konformaciją – iš tiesios struktūros susiformuoja lenkta grandinė link metalo jono. Buvo nustatytas ir aprašytas tipiškas molekulinio krūvio persiskirstymas įvykstant sužadinimui. Teigiama, kad dėl energetiškai palankios Fe2+ jono padėties viena lipidų molekulė tampa krūvio donoru, o kita – krūvio akceptoriumi.


References / Nuorodos

[1] Y. Dai, H. Tang, and S. Pang, The crucial roles of phospholipids in aging and lifespan regulation, Front. Physiol. 12, 775648 (2021),
https://doi.org/10.3389/fphys.2021.775648
[2] M. Pöhnl, M.F.W. Trollmann, and R.A. Böckmann, Nonuniversal impact of cholesterol on membranes mobility, curvature sensing and elasticity, Nat. Commun. 14, 8038 (2023),
https://doi.org/10.1038/s41467-023-43892-x
[3] A.L. Santos and G. Preta, Lipids in the cell: Organisation regulates function, Cell. Mol. Life Sci. 75, 1909–1927 (2018),
https://doi.org/10.1007/s00018-018-2765-4
[4] R. Wardhan and P. Mudgal, Introduction to biomembranes, in: Textbook of Membrane Biology (Springer Singapore, 2017) pp. 1–28,
https://doi.org/10.1007/978-981-10-7101-0_1
[5] P.L. Yeagle, Phospholipid headgroup behavior in biological assemblies, Acc. Chem. Res. 11, 321–327 (1978),
https://doi.org/10.1021/ar50129a001
[6] S. Mashaghi, T. Jadidi, G. Koenderink, and A. Mashaghi, Lipid nanotechnology, Int. J. Mol. Sci. 14, 4242-4282 (2013),
https://doi.org/10.3390/ijms14024242
[7] G. van Meer and A.I.P.M. de Kroon, Lipid map of the mammalian cell, J. Cell Sci. 124(1), 5–8 (2011),
https://doi.org/10.1242/jcs.071233
[8] D. Drabik, G. Chodaczek, S. Kraszewski, and M. Langner, Mechanical properties determination of DMPC, DPPC, DSPC, and HSPC solid-ordered bilayers, Langmuir 36(14), 3826–3835 (2020),
https://doi.org/10.1021/acs.langmuir.0c00475
[9] I. Schachter, R.O. Paananen, B. Fábián, P. Jurkiewicz, and M. Javanainen, The two faces of the liquid ordered phase, J. Phys. Chem. Lett. 13(5), 1307–1313 (2022),
https://doi.org/10.1021/acs.jpclett.1c03712
[10] R.X. Gu, S. Baoukina, and D.P. Tieleman, Phase separation in atomistic simulations of model membranes, J. Am. Chem. Soc. 142(6), 2844–2856 (2020),
https://doi.org/10.1021/jacs.9b11057
[11] D. Marsh, Structural and thermodynamic determinants of chain-melting transition temperatures for phospholipid and glycolipids membranes, Biochim. Biophys. Acta Biomembr. 1798(1), 40–51 (2010),
https://doi.org/10.1016/j.bbamem.2009.10.010
[12] S. Garcia-Manyes, G. Oncins, and F. Sanz, Effect of temperature on the nanomechanics of lipid bilayers studied by force spectroscopy, Biophys. J. 89(6), 4261-4274 (2005),
https://doi.org/10.1529/biophysj.105.065581
[13] H.J. Lessen, K.C. Sapp, A.H. Beaven, R. Ashkar, and A.J. Sodt, Molecular mechanisms of spontaneous curvature and softening in complex lipid bilayer mixtures, Biophys. J. 121(17), 3188–3199 (2022),
https://doi.org/10.1016/j.bpj.2022.07.036
[14] C. Sharma, P.V. Arya, and S. Singh, Lipid and membrane structures, in: Introduction to Biomolecular Structure and Biophysics: Basics of Biophysics, ed. G. Misra (Springer Singapore, 2017) pp. 139–182,
https://doi.org/10.1007/978-981-10-4968-2_6
[15] T. Harayama and H. Riezman, Understanding the diversity of membrane lipid composition, Nat. Rev. Mol. Cell Biol. 19, 281–296 (2018),
https://doi.org/10.1038/nrm.2017.138
[16] A. Ayala, M.F. Muñoz, and S. Argüelles, Lipid peroxidation: Production, metabolism, and signaling mechanisms of malondialdehyde and 4-hydroxy-2-nonenal, Oxid. Med. Cell. Longev. 2014, 360438 (2014),
https://doi.org/10.1155/2014/360438
[17] J.H. Choi and J.C. Kagan, Oxidized phospholipid damage signals as modulators of immunity, Open Biol. 15(7), 240391 (2025),
https://doi.org/10.1098/rsob.240391
[18] A.J. Pereira, H. Xing, L.J. de Campos, M.A. Seleem, K.M.P. de Oliveira, S.K. Obaro, and M. Conda-Sheridan, Structure-activity relationship study to develop peptide amphiphiles as species-specific antimicrobials, Chem. Eur. J. 30, e202303986 (2024),
https://doi.org/10.1002/chem.202303986
[19] A. Ghorbel, F.M. André, L.M. Mir, and T. García-Sánchez, Electrophoresis-assisted accumulation of conductive nanoparticles for the enhancement of cell electropermeabilization, Bioelectrochemistry 137, 107642 (2021),
https://doi.org/10.1016/j.bioelechem.2020.107642
[20] J.J. Sherba, S. Hogquist, H. Lin, J.W. Shan, D.I. Shreiber, and J.D. Zahn, The effects of electroporation buffer composition on cell viability and electro-transfection efficiency, Sci. Rep. 10, 3053 (2020),
https://doi.org/10.1038/s41598-020-59790-x
[21] K. Qian, Y. Wang, Y. Lei, Q. Yang, and C. Yao, An experimental and theoretical study on cell swelling for osmotic imbalance induced by electroporation, Bioelectrochemistry 157, 108637 (2024),
https://doi.org/10.1016/j.bioelechem.2023.108637
[22] S. Mahnič-Kalamiza and D. Miklavčič, The phenomenon of electroporation, in: Pulsed Electric Fields Technology for the Food Industry, Food Engineering Series (Springer Cham, 2022) pp. 107–141,
https://doi.org/10.1007/978-3-030-70586-2_3
[23] J. Teissié, N. Eynard, B. Gabriel, and M.P. Rols, Electropermeabilization of cell membranes, Adv. Drug Deliv. Rev. 35(1), 3–19 (1999),
https://doi.org/10.1016/S0169-409X(98)00060-X
[24] M. Tarek, Membrane electroporation: A molecular dynamics simulation, Biophys. J. 88, 4045–4053 (2005),
https://doi.org/10.1529/biophysj.104.050617
[25] Y. Zhang, Z. Luo, and F. Guo, Simulation of electroporation threshold based on the evolution of transmembrane potential and pore density, PeerJ 13, e19356 (2025),
https://doi.org/10.7717/peerj.19356
[26] D.P. Tieleman, The molecular basis of electroporation, BMC Biochem. 5 (2004),
https://doi.org/10.1186/1471-2091-5-10
[27] L. Rems, M. Viano, M.A. Kasimova, D. Miklavčič, and M. Tarek, The contribution of lipid peroxidation to membrane permeability in electropermeabilization: A molecular dynamics study, Bioelectrochemistry 125, article 10 (2019),
https://doi.org/10.1016/j.bioelechem.2018.07.018
[28] W.F.D. Bennett, N. Sapay, and D.P. Tieleman, Atomistic simulations of pore formation and closure in lipid bilayers, Biophys. J. 106(1), 210–219 (2014),
https://doi.org/10.1016/j.bpj.2013.11.4486
[29] M. Breton and L.M. Mir, Investigation of the chemical mechanisms involved in the electropulsation of membranes at the molecular level, Bioelectrochemistry 119, 76–83 (2018),
https://doi.org/10.1016/j.bioelechem.2017.09.005
[30] O.N. Pakhomova, V.A. Khorokhorina, A.M. Bowman, R. Rodaite-Riševičiene, G. Saulis, S. Xiao, and A.G. Pakhomov, Oxidative effects of nanosecond pulsed electric field exposure in cells and cell-free media, Arch. Biochem. Biophys. 527, 55–64 (2012),
https://doi.org/10.1016/j.abb.2012.08.004
[31] P.T. Vernier, Z.A. Levine, Y.H. Wu, V. Joubert, M.J. Ziegler, L.M. Mir, and D.P. Tieleman, Electroporating fields target oxidatively damaged areas in the cell membrane, PLoS One 4(11), e7966 (2009),
https://doi.org/10.1371/journal.pone.0007966
[32] O. Yun, X.A. Zeng, C.S. Brennan, and Z. Han, Effect of pulsed electric field on membrane lipids and oxidative injury of Salmonella typhimurium. Int. J. Mol. Sci. 17(8), 1374 (2016),
https://doi.org/10.3390/ijms17081374
[33] C. Tang, X. Qiu, Z. Cheng, and N. Jiao, Molecular oxygen-mediated oxygenation reactions involving radicals, Chem. Soc. Rev. 50, 8067–8101 (2021),
https://doi.org/10.1039/D1CS00242B
[34] K.J.A. Davies, Oxidative stress, antioxidant defenses, and damage removal, repair, and replacement systems, IUBMB Life 50(4–5), 279–289 (2000),
https://doi.org/10.1080/713803728
[35] A. Rahal, A. Kumar, V. Singh, B. Yadav, R. Tiwari, S. Chakraborty, and K. Dhama, Oxidative stress, prooxidants, and antioxidants: The interplay, Biomed. Res. Int. 2014, 761264 (2014),
https://doi.org/10.1155/2014/761264
[36] L. Valgimigli, Lipid peroxidation and antioxidant protection, Biomolecules 13(9), 1291 (2023),
https://doi.org/10.3390/biom13091291
[37] A. Catalá and M. Díaz, Editorial: Impact of lipid peroxidation on the physiology and pathophysiology of cell membranes, Front. Physiol. 7, 423 (2016),
https://doi.org/10.3389/fphys.2016.00423
[38] J. Wong-Ekkabut, Z. Xu, W. Triampo, I.M. Tang, D.P. Tieleman, and L. Monticelli, Effect of lipid peroxidation on the properties of lipid bilayers: A molecular dynamics study, Biophys. J. 93, 4225–4236 (2007),
https://doi.org/10.1529/biophysj.107.112565
[39] E. Niki, Y. Yoshida, Y. Saito, and N. Noguchi, Lipid peroxidation: Mechanisms, inhibition, and biological effects, Biochem. Biophys. Res. Commun. 338, 668–676 (2005),
https://doi.org/10.1016/j.bbrc.2005.08.072
[40] S. Sasson, Nutrient overload, lipid peroxidation and pancreatic beta cell function, Free Radic. Biol. Med. 111, 102–109 (2017),
https://doi.org/10.1016/j.freeradbiomed.2016.09.003
[41] M.M. Gaschler and B.R. Stockwell, Lipid peroxidation in cell death, Biochem. Biophys. Res. Commun. 482, 419–425 (2017),
https://doi.org/10.1016/j.bbrc.2016.10.086
[42] H. Yin, L. Xu, and N.A. Porter, Free radical lipid peroxidation: Mechanisms and analysis, Chem. Rev. 111, 5944–5972 (2011),
https://doi.org/10.1021/cr200084z
[43] N.A. Porter, Mechanisms for the autoxidation of polyunsaturated lipids, Acc. Chem. Res. 19, 262–268 (1986),
https://doi.org/10.1021/ar00129a001
[44] D.A. Pratt, K.A. Tallman, and N.A. Porter, Free radical oxidation of polyunsaturated lipids: New mechanistic insights and the development of peroxyl radical clocks, Acc. Chem. Res. 44, 458–467 (2011),
https://doi.org/10.1021/ar200024c
[45] E. Gammella, S. Recalcati, I. Rybinska, P. Buratti, and G. Cairo, Iron-induced damage in cardiomyopathy: Oxidative-dependent and independent mechanisms, Oxid. Med. Cell Longevi 2015, 230182 (2015),
https://doi.org/10.1155/2015/230182
[46] M. Hayyan, M.A. Hashim, and I.M. Alnashef, Superoxide ion: Generation and chemical implications, Chem. Rev. 116(5), 3029–3085 (2016),
https://doi.org/10.1021/acs.chemrev.5b00407
[47] H.J.H. Fenton, LXXIII. – Oxidation of tartaric acid in presence of iron, J. Chem. Soc. Transact. 65, 899 (1894),
https://doi.org/10.1039/CT8946500899
[48] S. Lewis, V. Smuleac, A. Montague, L. Bachas, and D. Bhattacharyya, Iron-functionalized membranes for nanoparticle synthesis and reactions, Sep. Sci. Technol. 44, 3289–3311 (2009),
https://doi.org/10.1080/01496390903212805
[49] R.F. Castilho, A.R. Meinicke, A.E. Vercesi, and M. Hermes-Lima, Role of Fe(III) in Fe(II)Citratemediated peroxidation of mitochondrial membrane lipids, Mol. Cell Biochem. 196, 163–168 (1999),
https://doi.org/10.1023/A:1006988129221
[50] K. Yoshida, J. Terao, T. Suzuki, and K. Takama, Inhibitory effect of phosphatidylserine on iron-dependent lipid peroxidation, Biochem. Biophys. Res. Commun. 179, 1077–1081 (1991),
https://doi.org/10.1016/0006-291X(91)91929-7
[51] L. Tang, Y. Zhang, Z. Qian, and X. Shen, The mechanism of Fe2+-initiated lipid peroxidation in liposomes: The dual function of ferrous ions, the roles of the pre-existing lipid peroxides and the lipid peroxyl radical, Biochem. J. 352, 27–36 (2000),
https://doi.org/10.1042/bj3520027
[52] F.J. Schopfer, C. Cipollina, and B.A. Freeman, Formation and signaling actions of electrophilic lipids, Chem. Rev. 111(10), 5997–6021 (2011),
https://doi.org/10.1021/cr200131e
[53] A. Higdon, A.R. Diers, J.Y. Oh, A. Landar, and V.M. Darley-Usmar, Cell signalling by reactive lipid species: New concepts and molecular mechanisms, Biochem. J. 442, 453–464 (2012),
https://doi.org/10.1042/BJ20111752
[54] K. Vanommeslaeghe, O. Guvench, and A.D. MacKerell Jr, Molecular mechanics, in: Catalysis from A to Z: A Concise Encyclopedia (Wiley, 2013),
https://doi.org/10.1002/9783527671380
[55] A. Gruodis, Liuminescencija (Biznio mašinų kompanija, Vilnius, 2008)
[56] M.J. Frisch, G.W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, G. Scalmani, V. Barone, G.A. Petersson, H. Nakatsuji, et al., Gaussian 16 (2016),
https://gaussian.com/gaussian16/
[57] G. Scalmani and M.J. Frisch, Continuous surface charge polarizable continuum models of solvation. I. General formalism, J. Chem. Phys. 132, 114110 (2010),
https://doi.org/10.1063/1.3359469
[58] M.C. Durrant, A computational study of ligand binding affinities in Iron(Iii) porphine and protoporphyrin IX complexes, Dalton Trans. 43, 9754–9765 (2014),
https://doi.org/10.1039/c4dt01103a
[59] J. Pincemail, E. Cavalier, C. Charlier, J.P. Cheramybien, E. Brevers, A. Courtois, M. Fadeur, S. Meziane, C. Le Goff, B. Misset, et al. Oxidative stress status in COVID-19 patients hospitalized in intensive care unit for severe pneumonia. A pilot study, Antioxidants 10(2), 257 (2021),
https://doi.org/10.3390/antiox10020257
[60] F. Elgendey, R.A. Al Wakeel, S.A. Hemeda, A.M. Elshwash, S.E. Fadl, A.M. Abdelazim, M. Alhujaily, and O.A. Khalifa, Selenium and/or vitamin E upregulate the antioxidant gene expression and parameters in broilers, BMC Vet. Res. 18, article 310 (2022),
https://doi.org/10.1186/s12917-022-03411-4